# Latest **URL:** https://forum.kidsfirstdrc.org/latest.md [Latest](https://forum.kidsfirstdrc.org/latest.md) · [Categories](https://forum.kidsfirstdrc.org/categories.md) · [Tags](https://forum.kidsfirstdrc.org/tags.md) --- ## [Time to event and MRD information](https://forum.kidsfirstdrc.org/t/time-to-event-and-mrd-information/173)
**Author:** [@Caroline](https://forum.kidsfirstdrc.org/u/Caroline)\ **Replies:** 0\ **Last updated:** [May 3, 2023, 2:27pm UTC](https://forum.kidsfirstdrc.org/t/time-to-event-and-mrd-information/173 "2023-05-03T14:27:37Z")
Hi, I have access to the dbgap study phs002276. I did manage to download all mapped RNA-seq data, and some clinical information in the kids first portal. However, regarding clinical information, I only have information … --- ## [How are HPO modifiers used and queried](https://forum.kidsfirstdrc.org/t/how-are-hpo-modifiers-used-and-queried/169)
**Author:** [@Toby](https://forum.kidsfirstdrc.org/u/Toby)\ **Replies:** 0\ **Last updated:** [April 18, 2023, 7:06pm UTC](https://forum.kidsfirstdrc.org/t/how-are-hpo-modifiers-used-and-queried/169 "2023-04-18T19:06:08Z")
In exploring the Kids First data, I see it is possible to query by HPO terms. Is it also possible to query by HPO modifiers? How are the modifiers tied to the terms they modify? I am particularly interested in the cod… --- ## [Variants not having transmission patterns](https://forum.kidsfirstdrc.org/t/variants-not-having-transmission-patterns/157)
**Author:** [@clairegu](https://forum.kidsfirstdrc.org/u/clairegu)\ **Replies:** 0\ **Last updated:** [August 30, 2022, 3:20am UTC](https://forum.kidsfirstdrc.org/t/variants-not-having-transmission-patterns/157 "2022-08-30T03:20:05Z")
Hi! While browsing Variants exploration, I found there were some variants having no option in transmissions queries like De novo autosomal dominant, autosomal dominant or autosomal recessive. It would be grateful i… --- ## [Index file for BAM?](https://forum.kidsfirstdrc.org/t/index-file-for-bam/149)
**Author:** [@renwick](https://forum.kidsfirstdrc.org/u/renwick)\ **Replies:** 1\ **Last updated:** [May 18, 2022, 3:40pm UTC](https://forum.kidsfirstdrc.org/t/index-file-for-bam/149 "2022-05-18T15:40:24Z")
I’m in Cavatica and I would like to use the Genome Browser to visualize some regions of the BAM files from the neuroblastoma cohort. The Genome Browser requires an index file for each BAM. Are index files already avail… --- ## [Search by File ID does not load list of files](https://forum.kidsfirstdrc.org/t/search-by-file-id-does-not-load-list-of-files/143)
**Author:** [@chapmano](https://forum.kidsfirstdrc.org/u/chapmano)\ **Replies:** 3\ **Last updated:** [March 11, 2022, 2:30pm UTC](https://forum.kidsfirstdrc.org/t/search-by-file-id-does-not-load-list-of-files/143 "2022-03-11T14:30:52Z")
Where is the bug? portal.kidsfirstdrc.org pedcbioportal.kidsfirstdrc.org data-tracker.kidsfirstdrc.org cavatica.sbgenomics.com Issue Description In one or two sentences, describe what you were trying to do. I have… --- ## [Cannot export the TSV file](https://forum.kidsfirstdrc.org/t/cannot-export-the-tsv-file/141)
**Author:** [@chong.simon.chu](https://forum.kidsfirstdrc.org/u/chong.simon.chu)\ **Replies:** 2\ **Last updated:** [March 1, 2022, 4:59pm UTC](https://forum.kidsfirstdrc.org/t/cannot-export-the-tsv-file/141 "2022-03-01T16:59:24Z")
Where is the bug? \[ +\] portal.kidsfirstdrc.org Issue Description I’m trying to download the manifest file of some selected samples, but the “Export TSV” button doesn’t work. Your environemnt Operating system: MacOS B… --- ## [Pedigree Information & Phenotype Information](https://forum.kidsfirstdrc.org/t/pedigree-information-phenotype-information/130)
**Author:** [@justinatse](https://forum.kidsfirstdrc.org/u/justinatse)\ **Replies:** 2\ **Last updated:** [January 4, 2022, 1:16am UTC](https://forum.kidsfirstdrc.org/t/pedigree-information-phenotype-information/130 "2022-01-04T01:16:24Z")
Hello! Can we download pedigree and phenotype information for each KidsFirst data set through the portal? Thank you very much! --- ## [CBTN Data Migration](https://forum.kidsfirstdrc.org/t/cbtn-data-migration/128)
**Author:** [@David-KFDRC](https://forum.kidsfirstdrc.org/u/David-KFDRC)\ **Replies:** 0\ **Last updated:** [December 17, 2021, 3:57pm UTC](https://forum.kidsfirstdrc.org/t/cbtn-data-migration/128 "2021-12-17T15:57:24Z")
The Children’s Brain Tumor Network recently received NIH support for sequencing many of CBTN’s remaining clinical samples as well as housing CBTN’s genomic data in the future. As part of this support, the CBTN is in the … --- ## [RAS Log-In Integration and Maintenance (November 2021)](https://forum.kidsfirstdrc.org/t/ras-log-in-integration-and-maintenance-november-2021/123)
**Author:** [@David-KFDRC](https://forum.kidsfirstdrc.org/u/David-KFDRC)\ **Replies:** 0\ **Last updated:** [November 16, 2021, 8:29pm UTC](https://forum.kidsfirstdrc.org/t/ras-log-in-integration-and-maintenance-november-2021/123 "2021-11-16T20:29:25Z")
Members of the Kids First Community, The Gabriella Miller Kids First Data Resource Portal will be undergoing maintenance on Monday, November 22nd. Our engineers will be replacing a key piece of software that allows user… --- ## [Typo of "Kid First: Hemangiomas (PHACE)"](https://forum.kidsfirstdrc.org/t/typo-of-kid-first-hemangiomas-phace/112)
**Author:** [@yiran](https://forum.kidsfirstdrc.org/u/yiran)\ **Replies:** 3\ **Last updated:** [October 8, 2021, 4:41pm UTC](https://forum.kidsfirstdrc.org/t/typo-of-kid-first-hemangiomas-phace/112 "2021-10-08T16:41:55Z")
Where is the bug? \[ x \] portal.kidsfirstdrc.org pedcbioportal.kidsfirstdrc.org data-tracker.kidsfirstdrc.org cavatica.sbgenomics.com Issue Description “Kids First” was misspelled as “Kid First” in the Studies page o… --- ## [Domain for study "KF-CHDALL"](https://forum.kidsfirstdrc.org/t/domain-for-study-kf-chdall/117)
**Author:** [@yiran](https://forum.kidsfirstdrc.org/u/yiran)\ **Replies:** 1\ **Last updated:** [October 8, 2021, 4:40pm UTC](https://forum.kidsfirstdrc.org/t/domain-for-study-kf-chdall/117 "2021-10-08T16:40:50Z")
The study Kids First: Heart Defects + Leukemia with children with Down Syndrome is labeled as ‘Birth Defect’ in the Domain column in the studies page of the portal. However I think there is also a cancer component in thi… --- ## [Study name discrepancy](https://forum.kidsfirstdrc.org/t/study-name-discrepancy/118)
**Author:** [@yiran](https://forum.kidsfirstdrc.org/u/yiran)\ **Replies:** 1\ **Last updated:** [October 8, 2021, 4:37pm UTC](https://forum.kidsfirstdrc.org/t/study-name-discrepancy/118 "2021-10-08T16:37:37Z")
In the Studies Page, the Name for KF-CHDALL is “Kids First: Heart Defects + Leukemia with children with Down Syndrome” - (in children is better than with children here) However in the Dashboard Page it is displayed as “… --- ## [No access to TARGET datasets in the portal](https://forum.kidsfirstdrc.org/t/no-access-to-target-datasets-in-the-portal/119)
**Author:** [@yiran](https://forum.kidsfirstdrc.org/u/yiran)\ **Replies:** 0\ **Last updated:** [September 29, 2021, 2:18pm UTC](https://forum.kidsfirstdrc.org/t/no-access-to-target-datasets-in-the-portal/119 "2021-09-29T14:18:26Z")
I got dbGaP approval to use TARGET data two days ago (see below for screenshot) I also connected Cancer Genomics Cloud in Cavatica (see below) However the TARGET files are still locked (see below in File Reposito… --- ## [Release date for studies in the portal](https://forum.kidsfirstdrc.org/t/release-date-for-studies-in-the-portal/116)
**Author:** [@yiran](https://forum.kidsfirstdrc.org/u/yiran)\ **Replies:** 0\ **Last updated:** [September 28, 2021, 2:56pm UTC](https://forum.kidsfirstdrc.org/t/release-date-for-studies-in-the-portal/116 "2021-09-28T14:56:28Z")
I just noticed that in the studies page of the portal, there is a new one “Kids First: Heart Defects + Leukemia with children with Down Syndrome” with dbGaP access ID phs002330. I guess more studies will be released in t… --- ## [Typo of "Nonsyndromic craniosynostosis"](https://forum.kidsfirstdrc.org/t/typo-of-nonsyndromic-craniosynostosis/114)
**Author:** [@yiran](https://forum.kidsfirstdrc.org/u/yiran)\ **Replies:** 1\ **Last updated:** [September 27, 2021, 5:45pm UTC](https://forum.kidsfirstdrc.org/t/typo-of-nonsyndromic-craniosynostosis/114 "2021-09-27T17:45:01Z")
Where is the bug? portal.kidsfirstdrc.org pedcbioportal.kidsfirstdrc.org data-tracker.kidsfirstdrc.org cavatica.sbgenomics.com Issue Description Typo of study name for nonsyndromic craniosynostosis Expected Behavi… --- ## [Somatic Workflow Update](https://forum.kidsfirstdrc.org/t/somatic-workflow-update/109)
**Author:** [@David-KFDRC](https://forum.kidsfirstdrc.org/u/David-KFDRC)\ **Replies:** 0\ **Last updated:** [August 30, 2021, 6:36pm UTC](https://forum.kidsfirstdrc.org/t/somatic-workflow-update/109 "2021-08-30T18:36:16Z")
Overview One role of the Kids First DRC is to produce harmonized datasets - files that can be compared across the different Kids First studies in the field of pediatric cancer and structural birth defects. These harmoniz… --- ## [Variant seen in VWB cannot be found in Variant Database webpage](https://forum.kidsfirstdrc.org/t/variant-seen-in-vwb-cannot-be-found-in-variant-database-webpage/103)
**Author:** [@yiran](https://forum.kidsfirstdrc.org/u/yiran)\ **Replies:** 1\ **Last updated:** [June 11, 2021, 12:41am UTC](https://forum.kidsfirstdrc.org/t/variant-seen-in-vwb-cannot-be-found-in-variant-database-webpage/103 "2021-06-11T00:41:31Z")
4-1805621-G-A can be seen in Variant WorkBench, see below for a screenshot taken 1 hour ago However when I search for it in the webpage of Variant DataBase (Kids First Data Portal), there is no such variant --- ## [Variant chromosome/position missing](https://forum.kidsfirstdrc.org/t/variant-chromosome-position-missing/102)
**Author:** [@yiran](https://forum.kidsfirstdrc.org/u/yiran)\ **Replies:** 0\ **Last updated:** [June 8, 2021, 8:34pm UTC](https://forum.kidsfirstdrc.org/t/variant-chromosome-position-missing/102 "2021-06-08T20:34:12Z")
Where is the bug? portal.kidsfirstdrc.org pedcbioportal.kidsfirstdrc.org data-tracker.kidsfirstdrc.org cavatica.sbgenomics.com Issue Description Information about chromosome and position is missing for some variant… --- ## [Which VCF to use for germline calls (neuroblastoma)](https://forum.kidsfirstdrc.org/t/which-vcf-to-use-for-germline-calls-neuroblastoma/89)
**Author:** [@rdmelamed](https://forum.kidsfirstdrc.org/u/rdmelamed)\ **Replies:** 2\ **Last updated:** [May 17, 2021, 3:39pm UTC](https://forum.kidsfirstdrc.org/t/which-vcf-to-use-for-germline-calls-neuroblastoma/89 "2021-05-17T15:39:39Z")
Hello! I want to make sure I’m using the portal right. I basically want to get all the relevant processed data for a given patient ie PT\_AJ04JZ0D … I’m not interested in improving upon the variant calls, so I just want … --- ## [Age at Diagnosis](https://forum.kidsfirstdrc.org/t/age-at-diagnosis/95)
**Author:** [@renwick](https://forum.kidsfirstdrc.org/u/renwick)\ **Replies:** 2\ **Last updated:** [May 14, 2021, 5:45pm UTC](https://forum.kidsfirstdrc.org/t/age-at-diagnosis/95 "2021-05-14T17:45:30Z")
I want to use Age at Diagnosis as part of my analysis of Neuroblastoma. The Explore Data tab shows a histogram of Age at Diagnosis but none of the files I can download includes that information. The Clinical Data files… --- ## [Which vcf to use for tumor calls? (neuroblastoma)](https://forum.kidsfirstdrc.org/t/which-vcf-to-use-for-tumor-calls-neuroblastoma/97)
**Author:** [@rdmelamed](https://forum.kidsfirstdrc.org/u/rdmelamed)\ **Replies:** 0\ **Last updated:** [May 14, 2021, 3:54pm UTC](https://forum.kidsfirstdrc.org/t/which-vcf-to-use-for-tumor-calls-neuroblastoma/97 "2021-05-14T15:54:34Z")
Hello! I’m actually wondering more generally if there’s documentation about what the various files are and what purposes they are intended for. But specifically, if I want to get all high quality tumor variant calls, w… --- ## [Variant WorkBench redirection after notebook timeout](https://forum.kidsfirstdrc.org/t/variant-workbench-redirection-after-notebook-timeout/87)
**Author:** [@yiran](https://forum.kidsfirstdrc.org/u/yiran)\ **Replies:** 0\ **Last updated:** [April 21, 2021, 3:00pm UTC](https://forum.kidsfirstdrc.org/t/variant-workbench-redirection-after-notebook-timeout/87 "2021-04-21T15:00:37Z")
Where is the bug? portal.kidsfirstdrc.org pedcbioportal.kidsfirstdrc.org data-tracker.kidsfirstdrc.org cavatica.sbgenomics.com Issue Description After being idle for some time, the Zeppelin Notebook page for Varian… --- ## [Cavatica Projects in the Portal Dashboard](https://forum.kidsfirstdrc.org/t/cavatica-projects-in-the-portal-dashboard/86)
**Author:** [@yiran](https://forum.kidsfirstdrc.org/u/yiran)\ **Replies:** 0\ **Last updated:** [April 21, 2021, 4:43am UTC](https://forum.kidsfirstdrc.org/t/cavatica-projects-in-the-portal-dashboard/86 "2021-04-21T04:43:10Z")
Where is the bug? portal.kidsfirstdrc.org pedcbioportal.kidsfirstdrc.org data-tracker.kidsfirstdrc.org cavatica.sbgenomics.com Issue Description Bottom is out of bound. Expected Behavior Content should be within l… --- ## [Is there a way to export saved searches in the "Explore Data" page of the portal?](https://forum.kidsfirstdrc.org/t/is-there-a-way-to-export-saved-searches-in-the-explore-data-page-of-the-portal/84)
**Author:** [@yiran](https://forum.kidsfirstdrc.org/u/yiran)\ **Replies:** 2\ **Last updated:** [April 21, 2021, 2:32am UTC](https://forum.kidsfirstdrc.org/t/is-there-a-way-to-export-saved-searches-in-the-explore-data-page-of-the-portal/84 "2021-04-21T02:32:14Z")
Is there a way to export saved searches in the “Explore Data” page of the portal? E.g. I want to have a list of HPO terms/numbers in one of my queries which includes “Observed Phenotype (HPO)” as one of the criteria. Th… --- ## [Saved queries cannot be deleted](https://forum.kidsfirstdrc.org/t/saved-queries-cannot-be-deleted/85)
**Author:** [@yiran](https://forum.kidsfirstdrc.org/u/yiran)\ **Replies:** 0\ **Last updated:** [April 21, 2021, 2:29am UTC](https://forum.kidsfirstdrc.org/t/saved-queries-cannot-be-deleted/85 "2021-04-21T02:29:23Z")
Where is the bug? portal.kidsfirstdrc.org pedcbioportal.kidsfirstdrc.org data-tracker.kidsfirstdrc.org cavatica.sbgenomics.com Issue Description In Kids First Data Portal, when clicking the trash can of a saved que… --- ## [Diagnosis/phenotype discrepancy between DRP page and downloaded clinical data](https://forum.kidsfirstdrc.org/t/diagnosis-phenotype-discrepancy-between-drp-page-and-downloaded-clinical-data/81)
**Author:** [@yiran](https://forum.kidsfirstdrc.org/u/yiran)\ **Replies:** 1\ **Last updated:** [April 14, 2021, 12:13pm UTC](https://forum.kidsfirstdrc.org/t/diagnosis-phenotype-discrepancy-between-drp-page-and-downloaded-clinical-data/81 "2021-04-14T12:13:35Z")
Where is the bug? portal.kidsfirstdrc.org pedcbioportal.kidsfirstdrc.org data-tracker.kidsfirstdrc.org cavatica.sbgenomics.com Issue Description In one or two sentences, describe what you were trying to do. I am c… --- ## [FASTQ Retirement](https://forum.kidsfirstdrc.org/t/fastq-retirement/70)
**Author:** [@David-KFDRC](https://forum.kidsfirstdrc.org/u/David-KFDRC)\ **Replies:** 0\ **Last updated:** [March 5, 2021, 2:14pm UTC](https://forum.kidsfirstdrc.org/t/fastq-retirement/70 "2021-03-05T14:14:52Z")
Where did the FASTQs go? The Kids First DRC is retiring the FASTQ file format for all whole genome sequencing data within Kids First studies on the portal. This is part of our ongoing efforts to provide cross-analyzable… --- ## [Can't access my data files!](https://forum.kidsfirstdrc.org/t/cant-access-my-data-files/46)
**Author:** [@David-KFDRC](https://forum.kidsfirstdrc.org/u/David-KFDRC)\ **Replies:** 1\ **Last updated:** [October 22, 2020, 2:24pm UTC](https://forum.kidsfirstdrc.org/t/cant-access-my-data-files/46 "2020-10-22T14:24:56Z")
Where is the bug? portal.kidsfirstdrc.org pedcbioportal.kidsfirstdrc.org data-tracker.kidsfirstdrc.org cavatica.sbgenomics.com Issue Description I was on the Portal trying to access files related to my project, but… --- ## [When I transfer files to cavatica the portal says it worked but the files don't show up](https://forum.kidsfirstdrc.org/t/when-i-transfer-files-to-cavatica-the-portal-says-it-worked-but-the-files-dont-show-up/49)
**Author:** [@chris-friedman](https://forum.kidsfirstdrc.org/u/chris-friedman)\ **Replies:** 2\ **Last updated:** [October 22, 2020, 2:11pm UTC](https://forum.kidsfirstdrc.org/t/when-i-transfer-files-to-cavatica-the-portal-says-it-worked-but-the-files-dont-show-up/49 "2020-10-22T14:11:39Z")
Where is the bug? portal.kidsfirstdrc.org pedcbioportal.kidsfirstdrc.org data-tracker.kidsfirstdrc.org cavatica.sbgenomics.com Issue Description When I try to transfer files from the portal to Cavatica, the portal …