# Data Access & Analysis **URL:** https://forum.kidsfirstdrc.org/c/cavatica-analysis-help/7.md [Latest](https://forum.kidsfirstdrc.org/latest.md) · [Categories](https://forum.kidsfirstdrc.org/categories.md) · [Tags](https://forum.kidsfirstdrc.org/tags.md) --- ## [Time to event and MRD information](https://forum.kidsfirstdrc.org/t/time-to-event-and-mrd-information/173)
**Author:** [@Caroline](https://forum.kidsfirstdrc.org/u/Caroline)\ **Replies:** 0\ **Last updated:** [May 3, 2023, 2:27pm UTC](https://forum.kidsfirstdrc.org/t/time-to-event-and-mrd-information/173 "2023-05-03T14:27:37Z")
Hi, I have access to the dbgap study phs002276. I did manage to download all mapped RNA-seq data, and some clinical information in the kids first portal. However, regarding clinical information, I only have information … --- ## [How are HPO modifiers used and queried](https://forum.kidsfirstdrc.org/t/how-are-hpo-modifiers-used-and-queried/169)
**Author:** [@Toby](https://forum.kidsfirstdrc.org/u/Toby)\ **Replies:** 0\ **Last updated:** [April 18, 2023, 7:06pm UTC](https://forum.kidsfirstdrc.org/t/how-are-hpo-modifiers-used-and-queried/169 "2023-04-18T19:06:08Z")
In exploring the Kids First data, I see it is possible to query by HPO terms. Is it also possible to query by HPO modifiers? How are the modifiers tied to the terms they modify? I am particularly interested in the cod… --- ## [Variants not having transmission patterns](https://forum.kidsfirstdrc.org/t/variants-not-having-transmission-patterns/157)
**Author:** [@clairegu](https://forum.kidsfirstdrc.org/u/clairegu)\ **Replies:** 0\ **Last updated:** [August 30, 2022, 3:20am UTC](https://forum.kidsfirstdrc.org/t/variants-not-having-transmission-patterns/157 "2022-08-30T03:20:05Z")
Hi! While browsing Variants exploration, I found there were some variants having no option in transmissions queries like De novo autosomal dominant, autosomal dominant or autosomal recessive. It would be grateful i… --- ## [Index file for BAM?](https://forum.kidsfirstdrc.org/t/index-file-for-bam/149)
**Author:** [@renwick](https://forum.kidsfirstdrc.org/u/renwick)\ **Replies:** 1\ **Last updated:** [May 18, 2022, 3:40pm UTC](https://forum.kidsfirstdrc.org/t/index-file-for-bam/149 "2022-05-18T15:40:24Z")
I’m in Cavatica and I would like to use the Genome Browser to visualize some regions of the BAM files from the neuroblastoma cohort. The Genome Browser requires an index file for each BAM. Are index files already avail… --- ## [Pedigree Information & Phenotype Information](https://forum.kidsfirstdrc.org/t/pedigree-information-phenotype-information/130)
**Author:** [@justinatse](https://forum.kidsfirstdrc.org/u/justinatse)\ **Replies:** 2\ **Last updated:** [January 4, 2022, 1:16am UTC](https://forum.kidsfirstdrc.org/t/pedigree-information-phenotype-information/130 "2022-01-04T01:16:24Z")
Hello! Can we download pedigree and phenotype information for each KidsFirst data set through the portal? Thank you very much! --- ## [No access to TARGET datasets in the portal](https://forum.kidsfirstdrc.org/t/no-access-to-target-datasets-in-the-portal/119)
**Author:** [@yiran](https://forum.kidsfirstdrc.org/u/yiran)\ **Replies:** 0\ **Last updated:** [September 29, 2021, 2:18pm UTC](https://forum.kidsfirstdrc.org/t/no-access-to-target-datasets-in-the-portal/119 "2021-09-29T14:18:26Z")
I got dbGaP approval to use TARGET data two days ago (see below for screenshot) I also connected Cancer Genomics Cloud in Cavatica (see below) However the TARGET files are still locked (see below in File Reposito… --- ## [Which VCF to use for germline calls (neuroblastoma)](https://forum.kidsfirstdrc.org/t/which-vcf-to-use-for-germline-calls-neuroblastoma/89)
**Author:** [@rdmelamed](https://forum.kidsfirstdrc.org/u/rdmelamed)\ **Replies:** 2\ **Last updated:** [May 17, 2021, 3:39pm UTC](https://forum.kidsfirstdrc.org/t/which-vcf-to-use-for-germline-calls-neuroblastoma/89 "2021-05-17T15:39:39Z")
Hello! I want to make sure I’m using the portal right. I basically want to get all the relevant processed data for a given patient ie PT\_AJ04JZ0D … I’m not interested in improving upon the variant calls, so I just want … --- ## [Age at Diagnosis](https://forum.kidsfirstdrc.org/t/age-at-diagnosis/95)
**Author:** [@renwick](https://forum.kidsfirstdrc.org/u/renwick)\ **Replies:** 2\ **Last updated:** [May 14, 2021, 5:45pm UTC](https://forum.kidsfirstdrc.org/t/age-at-diagnosis/95 "2021-05-14T17:45:30Z")
I want to use Age at Diagnosis as part of my analysis of Neuroblastoma. The Explore Data tab shows a histogram of Age at Diagnosis but none of the files I can download includes that information. The Clinical Data files… --- ## [Which vcf to use for tumor calls? (neuroblastoma)](https://forum.kidsfirstdrc.org/t/which-vcf-to-use-for-tumor-calls-neuroblastoma/97)
**Author:** [@rdmelamed](https://forum.kidsfirstdrc.org/u/rdmelamed)\ **Replies:** 0\ **Last updated:** [May 14, 2021, 3:54pm UTC](https://forum.kidsfirstdrc.org/t/which-vcf-to-use-for-tumor-calls-neuroblastoma/97 "2021-05-14T15:54:34Z")
Hello! I’m actually wondering more generally if there’s documentation about what the various files are and what purposes they are intended for. But specifically, if I want to get all high quality tumor variant calls, w… --- ## [Is there a way to export saved searches in the "Explore Data" page of the portal?](https://forum.kidsfirstdrc.org/t/is-there-a-way-to-export-saved-searches-in-the-explore-data-page-of-the-portal/84)
**Author:** [@yiran](https://forum.kidsfirstdrc.org/u/yiran)\ **Replies:** 2\ **Last updated:** [April 21, 2021, 2:32am UTC](https://forum.kidsfirstdrc.org/t/is-there-a-way-to-export-saved-searches-in-the-explore-data-page-of-the-portal/84 "2021-04-21T02:32:14Z")
Is there a way to export saved searches in the “Explore Data” page of the portal? E.g. I want to have a list of HPO terms/numbers in one of my queries which includes “Observed Phenotype (HPO)” as one of the criteria. Th…